Genome Assembly Tools and Software - PART1 !!
...reads coverage information or sequencing reads. GAML 0.1 &n...pipeline for deep Illumina resequencing data. It assembles reads into..., like those produced by SMRT sequencing technologies (PacBio RS II) a...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2678 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2515 days ago
Awesome perl frameworks, libraries and software - PART 1
...sp;- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis masukomi...ible? genoo/GenOO - A Modern Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2482 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...values Software (C++) http://www.dei.unipd.it/~ciompin/main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...2364 days ago
Single Cell RNAseq data analysis tutorial !!
...– consensus clustering of single-cell RNA-Seq data http://biorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing analysis http://biorxiv.org/...2343 days ago
2343 days ago
List of visualization tools for genome alignments
...zation of sequence features, next-generation sequencing (NGS) data and the results of...alization of sequences derived from multiple sequencing technologies. Low- or high-de...e all unique sequences in an entire Illumina sequencing run http://www.sourceforge.n...2277 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in devel...2267 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...ker: Dr. Suman Kapoor, Manager- Application Science at Strand Life Sciences, has over 11 years experience in molecular biology, next-generation sequencing based testing, clinical genom...2257 days ago
Some useful Bioinformatics links
...bly of the European eel genome from nanopore sequencing reads | Scientific Reports h...-302 Fast and sensitive mapping of nanopore sequencing reads with GraphMap | Nature...genome assembled de novo using only nanopore sequencing data | Nature Methods https:...2234 days ago