Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1943 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2032 days ago
2130 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...r analyzing PacBio data. Minimap only accepts two FASTQ files and you need to map your FASTQ file against itself. So, if you have multiple FASTQ sequencing files, you have to concatenat...2160 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...lt;= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to increase sensitivity for different sequencing technologies. Valid options a...2285 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
... Getting Genetics Done Gigabase or gigabyte Genome Spot CoreGenomics The Genome Factory RajLab Omics! Omics! Next-Gen Sequencing Blasted Bioinformatics!?...2313 days ago
Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2686 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on...2695 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...d, Panthera pardus orientalis, an endangered sub-species of leopard found in southern Russia and northern China. https://www.genomeweb.com/sequencing/amur-leopard-genome-sequenced...2726 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A field guide to whole-genome sequencing, assembly and annotation http://onlinelibrary.wiley.com/doi/10.1111/eva.12178/full2868 days ago