mrFAST: Micro Read Fast Alignment Search Tool
...d error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAST with respect to the library settings. mrFAST is designed to find&n...2945 days ago
2640 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
...phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of user...2314 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...you want, and now the only way to get it is to produce way too many assemblies on a good RNA data set, with several methods and several parameter settings.2057 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
.... When compared to other TF mining resources, MAGIC displayed favourable performance in predicting TFs and cofactors that drive gene changes in 4 settings: 1) A cell line expressing...1270 days ago
986 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...n choose a supermatrix approach and/or gene tree inference followed by supertree reconstruction. Users can specify a range of alignment filtering settings to retain high-quality alignm...88 days ago