Results for "single-molecule physical genome mapping"
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Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning your data...2928 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous d...yashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from whole-genome...
2928 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and th...utomatically detect ambiguous mappings. Satsuma has parallelizati...amp; Lindblad-Toh, K. (2010). Genome-wide synteny through highly se...2928 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experimen...ssist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome...2921 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation...quencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads...verage and exome) in the 1000 Genomes Project. To provide highly ac...2921 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most wor...g, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that cont...
2921 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome....2919 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2918 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identifiers or annotations. To use db2db select the i...
2908 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. Th...tion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome...
2907 days ago
