Results for "single-molecule physical genome mapping"
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Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely...2651 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol...the absence of structural variants, mapping locations of the paired ends...they can be mapped to the reference genome as “expected”: (a...can only be mapped to the reference genome by breaking into two sub-reads...2514 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your...2481 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two d...g sequence isolated at random from a cDNA library, used for identification and mapping of coding sequences, for disc...2454 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq d...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...2363 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was u...pades.py will show you the options: spades.py This produces: SPAdes genome...
2343 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...es and reveal cell-type-specific expression changes in type 2 diabetes http://genome....2343 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis p...ion, alternative splicing, functional analysis, gene fusion detection and eQTL mapping. A survey of best practices...
2343 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau&ndash...2333 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...2324 days ago
