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Results for "single-molecule technologies"

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• • Rahul Nayak@rahul

  

  Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta

  2065 days ago

• • Neelam Jha@neelam

  

  Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert

  2039 days ago

• • Abhimanyu Singh@abhimanyu

  

  #BLASTCLUST - BLAST score-based single-linkage #clustering. http://nebc.nerc.ac.uk/bioinformatics/documentation/blast/blastclust.html

  2038 days ago

• • BioJoker@biojoker

  

  #CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/

  1940 days ago

• • Jit@jit.aber

  

  I recommend two technologies: long reads to get the genome right, short reads to get the bases right. #Genome #Assembly #Reads #LonfReads

  1940 days ago

• • LEGE@lege

  

  Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

  1619 days ago

• • Rahul Agarwal@raag

  

  https://www.cartana.se/ #Brain #Single #cell #sequencing

  1553 days ago

• • Rahul Agarwal@raag

  

  https://panglaodb.se/index.html #Single #Cell #database

  1553 days ago

• • Rahul Agarwal@raag

  

  https://github.com/AllonKleinLab/scrublet #Doublet #removal #single #cell

  1553 days ago

• • BioStar@biostar

  

  #Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

  91 days ago

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