simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations onl...2364 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...son methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST takes ful...ength, etc.), Does not require any additional hardware, since it is a software solution. It is easy to insta...2361 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2358 days ago
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NanoSim: nanopore sequence read simulator based on statistical characterization.
...is written in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nanosim https://github.com/b...2344 days ago
xmatchview: smith-waterman alignment visualization
....org) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://www.bcgsc.ca/platform/bioinfo/software/xmatchview2334 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library un...2334 days ago
Seal: SEquence ALignment evaluation suite
...ensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provide...res of accuracy. Seal has interfaces to evaluate the following software packages: Bowtie BWA MAQ...2328 days ago
Mobyle: a new full web bioinformatics framework
...thus enabling a federated network of curated bioinformatics portals without the user having to learn complex concepts or to install sophisticated software.2323 days ago