1551 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...pbell C, Chiang D, Morrissey M (2016). “PureCN: Copy number calling and SNV classification using targeted short read sequencing.” Source Code for Biology and Medicine...2110 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to...2109 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ong all competing algorithms and highest accuracy when most of the basepairs of a long read are covered with short reads. Availability: Hercules source code is available at https://...2099 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...ed short reads. Our results on bacterial, fungal and insect data sets show that CoLoRMap compares well with existing hybrid correction methods.The source code of CoLoRMap is freely av...2099 days ago
2097 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produ...2097 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...ed operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system ca...lowing the user to run the system alongside any other operating system. Source codes for all programs are pr...2097 days ago
2061 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...ash; and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is open source and freely available from&nbs...2028 days ago