SKESA: strategic k-mer extension for scrupulous assemblies
...in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. Source code for SKESA is freely avai...2013 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
...long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source folder: https://github.c...2015 days ago
2011 days ago
SIMBA: a Genome Assembly Project Management System
...ticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely dow...1998 days ago
1988 days ago
1986 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is simple to use especially for the beginners in programming and...1980 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST ...1976 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to sepa...1972 days ago
1967 days ago