Results for "split"
Top-level pages
...om conservation of gene order or operon organisation in different genomes. Also the detection of gene fusion and gene fission (i.e, one protein is split into two in another genome) e...3954 days ago
List of In-silico Binding Site Prediction Tools
...structures. To identify protein binding sites, we model the shape of a split pocket induced by a binding l...a purely geometric method to extract site-specific spatial patterns of split pockets as templates to match...3751 days ago
Perl one-liner for bioinformatician !!!
...‘x’ 50 character longperl -le 'print join ", ", map { ord } split //, "hello world"'#Will print...perl-oneliners-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-file/3635 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., post-alignment tool Input: pileupformat (Maq or Samtools) Output: SV-M Description: Structural Variant Machine - predicts indels, uses split read alignment profiles, vali...2916 days ago
Quick next generation sequencing (NGS) terms definition
...gnature produced by these type of reads is known as read-pair signature.split reads: a read that can o...pped to the reference genome by breaking into two sub-reads is called a split-read. These types of reads al...2529 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...genesis -- The development of a new clade; the splitting of a single lineage into...er consideration. The points at which lineages split represent ancestor taxa to th...ter group -- The two clades resulting from the splitting of a single lineage. ste...2469 days ago
PerlOneLiner for Bioinformatician
...st = (1,2)x20; print "@list"' # Create an array from a string@months = split ' ', "Jan Feb Mar Apr May Jun...lues for characters in the stringperl -le 'print join ", ", map { ord } split //, "hello world"' # Convert...2309 days ago
- ...txt | while read line; do cp "$line" complete_dataset/"$line"; done To split bam files into sets with mapp...: zcat *.fastq.gz | paste - - - - | cut -f 2 | tr -d '\n' | wc -c To split multifasta file into many fas...
2224 days ago
Parallel Processing with Perl !
...t all together, If you have 100GB data you can do this step 1 : split the dataset equally according...y take a few hours(about 2-3 hrs for 100GB file)You can use unix “split” command for thisfor ex...2087 days ago
