Calculate some statistics for a DNA alignment with Perl
...io::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->...gnin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...lnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq...t "\n\n"; } my $result3 = $stats->calc_average_KaKs($alnobj, 1...2657 days ago
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Installing docker for Bioinformatics on Ubuntu !
...tar archive (streamed to STDOUT by default) search Search the Docker Hub for images start Start one or more stopped containers stats Display a live stream o...1521 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1224 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1062 days ago
Run Pango on your multifasta file !
...nTreeHeaders_v1.joblib Designated hash: /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/pangoLEARN/data/lineages.hash.csv Job stats: job cou...895 days ago
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Perl script to parse blast results and plot basic stats !
...NGTH'); my ($min_evalue, $max_evalue, $avg_evalue) = calculate_summary_stats(\@blast_entries, 'EVALUE'); my ($min_bitscore, $max_bitscore, $avg_bitscore) = calculate_summary_stats(\@blast_entries, 'BITSCORE');...102 days ago