Results for "strains"
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...me. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, l...3022 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a FA...
3021 days ago
- ...ecting HGT between closely related species or strains is challenging, as the phylog...n detecting HGT between congeneric species or strains, especially in clinical micro...candidate HGT events between closely related strains. The method confirms candidat...
2887 days ago
- ...gements, insertions or deletions of genome segments between species or strains.It can be easily used to comp...ces, especially closely related genomes such as inter-species or inter-strains. In addition, it can also sho...
2647 days ago
- ...file. Highlighting differences and/or similarities in gene content between related organisms. Comparing SNPs and indels between closely-related strains or serovars. Comparing gene...
2518 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucl...2012 days ago
- ...cles for science dissemination, and provides visualization functionalities for genome variation analysis results based on all collected 2019-nCoV strains. Annotation https://bigd.bi...
1472 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...s is problematic, as the modern deluge of sequencing data means that comparative genomics analyses could be performed on datasets of thousands of strains.1374 days ago
mixtureS: a novel tool for bacterial strain reconstruction from reads
...mixtureS that can de novo identify bacterial strains from shotgun reads of a clona...mic sample, without prior knowledge about the strains and their variations. Tested...al datasets, mixtureS reliably identified the strains, their numbers and their abun...1366 days ago
Sibelia: A comparative genomics tool
...p microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. Sib...1365 days ago
