Results for "structural variation"
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Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bio...2998 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short...2942 days ago
Hagfish - assess an assembly through creative use of coverage plots
...concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome re-sequencing exp...2917 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a r...as short insertions and deletions. To support the growing interest in larger structura...2917 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machin...-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in...
2917 days ago
- ...histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To...
2904 days ago
- ...te of tools for discovering and genotyping structural variations using sequencing data. The methods are designed to detect shared variation using data from multiple indi...support heterogeneous data sets, including variations in sequencing depth, read le...
2809 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structura...
2821 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for e...lour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the...
2814 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...es as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes,...2785 days ago
