2140 days ago
List of motif discovery tools !
...otein annotation by secondary structure elements Perform secondary structure predictions on protein sequen...sidues from proteins of known structure Search for functional annota...n ANnotation Diagram ORiented Analysis Find information about protei...2000 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinf...s, 25000 investigational drugs and 80000 chemical structures http://scientific.thomson.co....gov/ sites/entrez?db=omim PDTD: 3D drug target structur...1441 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to rea...pipelines and workflows, compute resources, data analysis reports, and case studies. GA...se construction, genome research, and bioservices analysis system consulting services. M...1266 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for impr...scriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio Amplicon Analysis) – separates complex mi...998 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...me assembly. No previous knowledge of the source DNA sequence length, structure or composition is inferred by...s/research/projects/annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1211 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1162 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1054 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldquo...941 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...nt annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analysis (Pangolin) Clade assignment,...884 days ago