2997 days ago
2997 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of H...diving head first into more advanced analysis tools such as HOMER. Setti...ranscript discovery and differential analysis with Cufflinks Differential...y or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2940 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2938 days ago
2776 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structur...2933 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in q...2916 days ago
2916 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2913 days ago
2913 days ago