Results for "system"
Bio-Scripts
Install Python locally on shared Linux server !
...wn #customized directory. #Here comes another important step. By the default, if we type python command, it will use the default python of #the system. We are going to update the e...2097 days ago
- ...file. ParallelCopyGCSDirectoryIntoHDFSSpark (BETA Tool) Parallel copy a file or directory from Google Cloud Storage into the HDFS file system used by Spark ------------...
2074 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2054 days ago
- ...cutables/blast+/LATEST/ncbi-blast-2.8.1+-x64-linux.tar.gz # decompress tar -zxvf ncbi-blast-2.8.1+-x64-linux.tar.gz # add BLAST location to system PATH export PATH=$HOME/tools...
1761 days ago
Perl script to run in parellel !
...r_seq ); print "finished run with parameters $chr_set!\n"; } sub touch { my ($fn, $seq) = @_; open FILE, ">$fn" or die $!; system ("augustus --species=caenorha...1686 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...te Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with pkg-config for the system ICU4C... 60.2 checking for I...1549 days ago
- library(vcfR) vcf_file
1524 days ago
Installing docker for Bioinformatics on Ubuntu !
...ices stack Manage Docker stacks swarm Manage Swarm system Manage Docker trust...cp Copy files/folders between a container and the local filesystem create Create a new c...1512 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists......1510 days ago
- ...~/Downloads/testDock$ sudo docker system df TYPE TOTAL...~/Downloads/testDock$ sudo docker system prune WARNING! This will rem...~/Downloads/testDock$ sudo docker system df TYPE TOTAL.../autoConTAMPR/issues Operating system: linux Perl executable at: /...
1508 days ago
