Results for "targeted"
Bookmarks
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very...3240 days ago
- ...e defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this page is targeted at end-users. For developers,...
2944 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for ge...to extract target sequences from high-throughput DNA sequencing reads. Targeted bait capture is a technique f...
2755 days ago
- ...entification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating the anal...s. Specifically, it improves the precision of calling CNVs overlapping targeted exons from WES data and enlar...
2729 days ago
- ...Asked Questions). You may also be interested in the Perl 6 design documents, which are in some places more complete than this documentation, but targeted toward compiler writers rathe...
2665 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...ariants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, i...2016). “PureCN: Copy number calling and SNV classification using targeted short read sequencing.”...2112 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...ents and (using the assembly option) deletions up to several kb. It has been extensively tested on whole-genome, exon-capture, and targeted capture data, it has bee...2035 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to deve...1657 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would b...1647 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 sa...1586 days ago
