Results for "text mining"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qual...; non-coding regions) that can occur in multiple contexts in the microbial community u...ehensive representation of a sequence assembly as a text f...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...ps programmers develop algorithms. Pseudocode is a "text-based" detail (algorithmic) d...rce code too. It really hels the readability of the text.S...2671 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and softwar...nbsp;- An interactive console text-based command-line Twitter cl...lass powered Wiki. xslate/p5-Text-Xslate - Scalable templa...erl routine to sync folder of text files with your notes on Simp...ntax highlighting for Sublime Text t...2501 days ago
- It is often necessary to import sample textbook data into R before you start working on your h... Table File A data table can resides in a text file. The cells inside the ta...bove in a file named "mydata.txt" with a text e...
2501 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calcula...nly transposition. use Text::Levenshtein qw(distance);...two strings. Here's just a selection. Text::LevenshteinXS and ...different weights to each edit type. Text::...2353 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retri...a reciprocal BLAST, or something. As with most programs that run on UNIX, the text o...2349 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic w...r system administrators and its power to manipulate text, it was the default choice fo...ge as well as its flexibility and power in managing text a...2333 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\=...'perl -le '@array = ("a".."z"); print $#array + 1' TEXT CONVERSION AND SUBSTITUTION--...-le 'print decode_entities($string)' # Convert all text t...2314 days ago
List of visualization tools for network biology
...s/apid/ Arcadia Translates text-based descriptions of biologi...gration of data such as genomic context, high-throughput experiments,...System for managing, comparing and mining multiple networks http://tyn...yna/ VisANT Visualization, mining, analysis and modeling of bio...2300 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improv...NGS) data and the results of analyses within the context of the sequence, and also its...linegui.html SAMtools tview Simple and fast text a...2295 days ago
