gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. gapFinisher can fill gaps in draft genom...Tags: gapFinisher, reliable, gap, filling, pipeline, SSPACE, LongRead, scaffolder, NGS, Tools
1556 days ago
Introduction to phylogenies in R
R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's begin today by installing a few critical packages, such as ape, phangorn, phytools, and geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3.x...Tags: Introduction, phylogenies, R, Tools
928 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE, 2015; 10(4):1–23, CoMSA Compressor of multiple sequence alignments of proteins. • &...Tags: Tools, Bioinformatics, Genome, Programming
856 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural and functional annotations of proteins between sequenced genomes. ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human...Tags: comparative, Genomics, Resources, Tools, Server, Comparative Genomics
670 days ago
Tags: RNA, classification, Tools
537 days ago