Results for "transcript"
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HOMER: Software for motif discovery and next-gen sequencing analysis
...ipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript discovery and differential an...2946 days ago
- ...& Wurm (2011) Visualization and quality assessment of de novo genome assemblies. In brief, our scripts create Cytoscape files to visualize transcript evidence that suggests adjace...
2826 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-...1141 days ago
- ...sampling Gene finding &mdash statistical models for ab initio and evidence-guided prediction of genes RNA-seq and transcriptomics &mdash transcript assembly, abundance estimatio...
2364 days ago
PASA: Gene Structure Annotation and Analysis
...genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically mo...so identifies and classifies all splicing variations supported by the transcript alignments.2336 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2260 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed t...d paired-end reads, while also achieves both transcripts parsimony and coverage devia...2204 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...ene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus i...2204 days ago
- ...onstructing splice graphs using an assembled transcriptome and whole genome shotgun s...algorithm also detects base substitutions in transcript sequences corresponding to se...r alternative exon-exon boundaries to detect transcript isoforms, which are reported...
2148 days ago
Ensembl Variation - Calculated variant consequences
...genome, we identify all overlapping Ensembl transcripts. We then use a rule-based ap...each allele of the variant may have on each transcript. The set of consequence terms...igned to each combination of an allele and a transcript is shown in the table below....2079 days ago
