3941 days ago
Phylogenetic for Bioinformatics
...e represented graphically through phylogenetic trees. Due to the fact that evoluti...et. Phylogeny and Reconstructing Phylogenetic Trees: http://aleph0.clarku.ed...software for the construction of phylogenetic trees BioEdit Coelocanth-Fi...3940 days ago
Best book Titles for Learning Bionformatics
...1998, Academic Press Introduction to Computational Molecular Biology, Joao Meidanis, Joao C. Setabal, 1997, PWS Pub. Co. Algorithms on Strings, Trees, and Sequences: Computer Scie...3911 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...nte Carlo simulation of molecular sequence evolution along phylogenetic trees. http://tree.bio.ed.ac.uk/sof...INK/FastSLINK utility program http://mlemire.freeshell.org/software.htmlTreesimJ A flexible, forward-time p...3731 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-b...3543 days ago
Awesome perl frameworks, libraries and software - PART 1
...ojolicious - Perl real-time web framework petdance/ack2 - ack 2.0 is a greplike tool optimized for programmers searching large heterogeneous trees of source code. rsnapshot/rs...2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...pology (k-mer based) Software (Python) https://github.com/fanhuan/AAF kSNP v3 Reference-free SNP identification and estimation of phylogenetic trees using SNPs (based on k-m...2365 days ago
Installing Bio::SCF perl module
...te.o inflate.cgcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.cgcc -O3 -D_LARGEFILE64_SOURC...1 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress...2212 days ago