Results for "usage"
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UCSC Genome Browser and Blat software !
...NIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage statement for the application...3015 days ago
Stand-alone programs for Bioinformatician
...ations see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the usage statement for each of the app...2921 days ago
- ...cluding: Updated to use samtools 1.1 and bcftools 1.2. Updated usage for bcftools.AboutSAMtools is...
2889 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate anno...
2654 days ago
splitbam: splits a BAM by chromosomes
...cord was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar splitbam.jar -p OU...2639 days ago
GroopM: Metagenomic binning toolset
...population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and usage instructions see : http://eco...2632 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...e with similar existing software and data source. Conclusion CHSMiner is characterized by its integrated workflow, fast speed and convenient usage. It will be useful for both e...2375 days ago
- ...quo;s shellscript or open it with a text editor. Most tools do not currently have a guide, but each has shellscripts with basic usage information. The “General Usage Guide” gives shared bac...
2353 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...(GIS). Ra is in development since 2014 in the form of several separate components that used to be run individually.This project aims to ease the usage of Ra by integrating it into...2336 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2274 days ago
