Results for "variant"
Top-level pages
...r phase by merging them.The binary search algorithm is an example of a variant of divide and conquer called...irected graphs, notably by using the simplex algorithm. A complex variant of linear programming is call...3938 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...escribes the RSEM software package] Comparing genomes and assemblies; variant detection Versatile and ope...ata. Krawitz et al, Bioinformatics 26(6):722-9, 2010. Full Text vipR: variant identification in pooled DNA...3771 days ago
List of bioinformatics open source projects/software.
...-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sc...ertise and knowledge exchange. Database of annotations aboute sequence variants with clinically relevant inf...3749 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...tion http://www.uhnresearch.ca/labs/tillier/software.htm#3SimRare Rare variant simulation and analysis tool...for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge....3729 days ago
Apps for Busy Bioinformatics Researchers !!!
...sequencing data including small variations, copy number variations (CNVs), and loss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated genes, f...3533 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ichment, Fusion detection and Variant calling Allows users to crea...ity of an individual carrying variant based on family’s raw m...ogram; SNV caller for somatic variants in “low cellularity ca...tion: Large-scale Analysis of Variants in noncoding Annotations; Ne...2901 days ago
- ...tools, for identifying and filtering genomics variants. bowtie: widely used, open...es into higher confidence for calling genomic variants. RNAME: reference genome id...tools for identifying and filtering genomics variants. Created by Heng Li, current...
2861 days ago
Genome Assembly Tools and Software - PART1 !!
...FermiKit 0.13 – De novo Assembly based Variant Calling pipeline for Illumina...ermiKit is a de novo assembly based variant calling pipeline for deep Ill...eneral time reversible model with gamma and invariant rate heterogeneity and a nove...2678 days ago
Awesome perl frameworks, libraries and software - PART 1
...nbsp;- Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant is annotated to only one of a...2481 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...al type of k-mers) Software (C++) http://www.csbio.unc.edu/rs/ Variant calling ChimeRScope Fusion....com/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SNP variants directly from raw NGS sequen...2363 days ago
