Results for "vcf"
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...up* GATK: Unified Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads and generates a list of likely variants in VCF format Pipelines are for tho...3645 days ago
- ...(GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to lif...
3000 days ago
- ...gh-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defin...n the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the...
2920 days ago
- ...s on a region by region basis, potentially tiling an entire large genome. DISCOVAR variant calling is under active development and transitioning to VCF. DISCOVAR de novo can genera...
2931 days ago
- ... mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to lif...
2791 days ago
- ...iant information. The variant call format (vcf) is an increasingly popu...eir content is discussed in the vignette ‘vcf data.’ These files are...s or otherwise problematic sites. The R package vcfR provides tools to facilitate...
2808 days ago
- ...;count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool i...
2619 days ago
- ...ta. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and calling/filtering/s...
2600 days ago
- ...FASTA Accepts a number of other commonly-used datatypes and file formats: BSR and TRF output, SAM/BAM files, VCF-encoded SNPs, tab-delimited f...
2497 days ago
Biological file format tutorial
...e difference between different formats. Please refer user manual or other information resources on web for more details. FASTA FASTQ SAM BAM VCF GFF GTF...2322 days ago
