Results for "vcf"
Top-level pages
List of bioinformatics open source projects/software.
...analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for scientists...3749 days ago
Perl one-liner for bioinformatician !!!
...enomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), there are still...3620 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...NimbleGen data summary files, VCF files, Impute2 GWAS files, Ha...erence genome: FASTA Output: VCF SOAPindel Description...: mpileup (SAMtools) Output: VCF TrioCaller Descriptio...low, medium or high) Input: VCF, BED Output: VCF (with new A...2901 days ago
- .... BCF Format: Binary call format. Binary, compressed format for storing VCF data. CIGAR String: Compact...DNA or RNA fragment is sequenced. Contrast with paired-end sequencing. VCF Format: Variant call format....
2861 days ago
Awesome perl frameworks, libraries and software - PART 1
...rce Code Linter briandfoy/PerlPowerTools - Perl Power Tools gshank/html-formhandler - a Perl Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each varian...2481 days ago
Convert VCF to tab-deilimited table
...r \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to m...2174 days ago
