Edit distance application in bioinformatics !
...h edit type. Text::Brew is an implementation of the Brew edit distance, which is another algorithm based on edit weights. Text::Fuzzy provides a number of operations for...2354 days ago
Tools for bacterial whole genome annotation
...the subsystems in the SEED database and provides detailed annotation and pa...ilable for download or use outside of the NCBI environment. BEACON (automated to...r annotating fully sequenced genomes. PAGIT: Provides a toolkit for improving th...2345 days ago
Bioinformatics Web Application Development with Perl
...It uses the Moose object system to provide great APIs for extension an...b frameworks, yet it retains its flexibility and vibrancy. In particular, its plu...::Object builds on Rose::DB to provide an object-relational mapper...2334 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...li.fa,salmonella.fa basename=out_%.fq outu1=clean1.fq outu2=clean2.fq BBSplit is available here:https://sourceforge.net/projects/bbmap/ The sensitivity can be raised to be equival...2327 days ago
PerlOneLiner for Bioinformatician
...length'perl -ne 'print if /\S/' # Remove all consecutive blank lines, leaving just oneperl -00 -pe ''perl...-le '$f = 1; $f *= $_ for 1..5; print $f' # Calculate greatest common divisor (GCM)perl -MMath::BigInt=b...2315 days ago
2304 days ago
List of visualization tools for network biology
...The Network analysis provides the ability to quantify associations between individuals, which makes it possible.../sites.google.com/site/medusa3visualization/ NAViGaTOR Visua...iapathways.sourceforge.net/ AVIS Viewer for signaling...2301 days ago
List of visualization tools for genome alignments
...the list of genome alignment visualization tools, which could...o/software/abyss-explorer BamView Genome browser and annotat...501 LookSeq Web-based visualization of sequences deriv...ed solution to management and visualization of sequencing data...2297 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...quently used tools for NGS analysis as well as giving experience in writing one-l...tput the contents of file less file — view file with page navigation h...ile as it grows, starting with the last 10 lines vim file — edit file...2293 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...data using a very intuitive workflow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which inclu...or end data interpretation. This webinar will give an overview of the features in the RNA-...2277 days ago