Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset...3585 days ago
Rosalind Bioinformatics problems !!!
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/3426 days ago
Stand-alone programs for Bioinformatician
...elp on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the...2906 days ago
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CGView - Circular Genome Viewer
GView is a Java package used to dis...navigate bacterial genomes. GView is useful for producing high-...l pan-and-zoom interface, or GView can write static images of a...amples of some of the images GView can produce, see the Image Ga...n to other genome maps using GView's custom file format.2785 days ago
2746 days ago
Maq: Mapping and Assembly with Quality
...e (ref.fasta). Better a bacterial genome. Download maq, maq-data and maqview at the download page. C...calib-30.dat where calib-30.dat is contained in maq-data. View the alignment: cd maqdemo/ea...2722 days ago
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miniasm: very fast OLC-based de novo assembler for noisy long reads
...size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104Mb assembly with N50 1.61Mb. This dotter plot gives a global view of the miniasm assembly (on t...2351 days ago