Results for "wgd"
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Ancient whole genome duplication (WGD) detection tools !
...about the analysis process of WGD. I searched for the keyword "...tps://peerj.com/articles/6303/WGDdetector: https:// github.com/...ticle introduces the usage of wgd. Wgd cannot be installed dir..._PREFIX=~/opt/miniconda3/envs/wgd/make -j 4 make insatall Ta...1164 days ago
Bookmarks
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used&...1391 days ago
Bio-Scripts
- ...python3.6/site-packages (from wgd==1.2) (1.5.1) Requirement al...-packages (from bokeh==1.4.0->wgd==1.2) (2.8.1) Requirement al...ages (from matplotlib>=3.0.2->wgd==1.2) (1.2.0) Requirement al...b16dc8a9c Successfully built wgd bokeh ete3 PyYAML sklearn In...
1216 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly...#Follow the steps (base) ➜ wgd git:(master) conda create -n...in /home/urbe/anaconda3/envs/wgd/lib/python3.7/site-packages (...heels for collected packages: wgd, bokeh, ete3, PyYAML, sklearn...a8f22d33e Successfully built wgd bokeh ete3 PyYAML sklearn In...1212 days ago
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wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together with tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a co...Tags: wgd, command, line, tools, analysis, ancient, whole-genome, duplications
1391 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is also a Ka corresponding to it, which refers to the av...Tags: wgd, duplication, whole, genome, plan, tools, software, synteny, list
1164 days ago
