BOL

Understanding Covid variant https://sangerinstitute.blog/2021/06/29/covid-connections-variant-or-villain/ #Covid #Variant #Disease #SARS-Cov2

#Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

NGS alignment and variant calling tutorial https://github.com/ekg/alignment-and-variant-calling-tutorial #NGS #variant #snp #tools #tutorial #calling

The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/

Variant calling workflow http://www.htslib.org/workflow/ #Variant #Calling #Tutorial

Variant calling https://www.ebi.ac.uk/training/online/course/human-genetic-variation-i-introduction/variant-identification-and-analysis/what-variant #variant #snp #tutorial

https://github.com/Ensembl/ensembl-vep #Variant #Effect #Predictor #Github

Variant Effect Predictor http://www.ensembl.org/Tools/VEP #Variant #Effect #Predictor

A tool set for short variant discovery in genetic sequence data. http://genome.sph.umich.edu/wiki/Vt #Tool #VT #Variant

VirVarSeq: a low frequency Virus Variant detection pipeline http://bioinformatics.oxfordjournals.org/content/early/2014/08/31/bioinformatics.btu587.abstract #Pipeline #Variant #VirVarSeq

A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/15/2/256.short #NGS #Tools #Survey #Variant