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Neelam Jha
@neelam
Neelam Jha
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The Wire
Neelam Jha
Neelam Jha's wire posts
Neelam Jha
@neelam
Thread
By
Neelam Jha
1526 days ago
Building a
#consensus
sequence with
#vcf
files
https:/
/
cbc.brown.edu/
blog/
consensus-vcf/
Neelam Jha
@neelam
Thread
By
Neelam Jha
1557 days ago
Cancer poisson distribution
https:/
/
www.r-bloggers.com/
cancer-clusters-and-the-poisson-distributions/
#cancer
#poisson
Neelam Jha
@neelam
Thread
By
Neelam Jha
1561 days ago
Install Git on Ubuntu $ apt-get install git-core
#Ubuntu
#Git
#Install
Neelam Jha
@neelam
Thread
By
Neelam Jha
1569 days ago
Awk hack for bioinformatician
https:/
/
www.shellhacks.com/
awk-print-column-change-field-separator-linux-bash/
#Hack
#Bioinfo
#Bash
Neelam Jha
@neelam
Thread
By
Neelam Jha
1571 days ago
Bio-python tutorial for beginners
http:/
/
biopython.org/
DIST/
docs/
tutorial/
Tutorial.html
#Python
#Bio
#BioPython
#Tutorial
Neelam Jha
@neelam
Thread
By
Neelam Jha
1575 days ago
What is bioinformatics
#Understanding
#Bioinformatics
https:/
/
academic.oup.com/
bib/
article/
20/
6/
1981/
5066445
Neelam Jha
@neelam
Thread
By
Neelam Jha
1622 days ago
Perl onliner to add string to each of the fasta header. $ perl -p -e 's/^(>.*)$/$1-origin/g' in.fasta > out.fasta
#String
#Header
#Fasta
Neelam Jha
@neelam
Thread
By
Neelam Jha
1626 days ago
Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }'
#Split
#fasta
#multifasta
Neelam Jha
@neelam
Thread
By
Neelam Jha
1636 days ago
Kill the screen $ screen -X -S [session # you want to kill] quit
#Screen
#Quit
#Linux
#Session
#Remote
Neelam Jha
@neelam
Thread
By
Neelam Jha
1636 days ago
#Rename
the
#fasta
#header
and
#keep
first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa
#Perl
Neelam Jha
@neelam
Thread
By
Neelam Jha
1665 days ago
List all files by size in Linux $ ls -l -S | sort -k 5 -n
#Linux
#Size
#List
Neelam Jha
@neelam
Thread
By
Neelam Jha
1680 days ago
Ten simple rules to create biological network figures for communication
https:/
/
journals.plos.org/
ploscompbiol/
article?id=10.1371/
journal.pcbi.1007244
#Rules
#Publication
Neelam Jha
@neelam
Thread
By
Neelam Jha
1703 days ago
Perl special variable
https:/
/
perldoc.perl.org/
perlvar.html
#Perl
#variable
Neelam Jha
@neelam
Thread
By
Neelam Jha
1749 days ago
Top 40 R packages
https:/
/
www.r-bloggers.com/
june-2019-top-40-r-packages/
#R
#Packages
Neelam Jha
@neelam
Thread
By
Neelam Jha
1760 days ago
Check an installed packages in Perl $ perl -e "use GD"
#Perl
#Check
#Package
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