BOL

Top 40 R packages https://www.r-bloggers.com/june-2019-top-40-r-packages/ #R #Packages

Check an installed packages in Perl $ perl -e "use GD" #Perl #Check #Package

The #SERB-National Post Doctoral #Fellowship (N-PDF) https://serbonline.in/SERB/npdf

#UNetbootin allows you to create #bootable #Live #USB drives for #Ubuntu and other Linux distributions without burning a CD. https://unetbootin.github.io/

Ten principles for machine-actionable #data management #plans https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006750

(smrttools) ➜ allBam for i in *.bam; do bamtools convert -format fasta -in $i -out $i.fasta; done #Convert #fasta

Shiny tutorial http://shiny.rstudio.com/tutorial/ #R #Shiny

Free opensource VPN software for mac https://tunnelblick.net/index.html #mac #vpn

Understanding Alignments https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session5-alignedReads.html #Understanding #Alignments

Bioinformatics jobs at CUJ, Jharkhand http://www.cuj.ac.in/downloads/advtbuilderDLS25oct2018.pdf #Job

Bioinformatics jobs at http://actrec.gov.in/data%20files/Vacancies/2018/ACTREC-Advt-74-2018.pdf #ACTREC #Job #Bioinformatics

http://www.bioconductor.org/packages/release/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf #Genome #Search #Mask

BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed #Bed #bam #bamToBed #convert

Next generation error correction https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=6104&context=etd #Error #Correct #NGS #Algorithms

Generate consensus from BAM file samtools mpileup -uf chr5B_leaf_rust.fasta M27454_5B_reads_sorted.bam | bcftools call -c | vcfutils.pl vcf2fq #BAM #Consensus