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Neelam Jha
@neelam
Neelam Jha
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The Wire
Neelam Jha
Neelam Jha's wire posts
Neelam Jha
@neelam
Thread
By
Neelam Jha
2046 days ago
GATK is open source
https:/
/
software.broadinstitute.org/
gatk/
#GATK
#Broad
Neelam Jha
@neelam
Thread
By
Neelam Jha
2046 days ago
Reverse complement of fasta sequence $ tr -d "\n " < chrII.fa | tr "[ATGCatgcNn]" "[TACGtacgNn]" | rev > chrII_reverseHai.fa
#Reverse
#Complement
#DNA
Neelam Jha
@neelam
Thread
By
Neelam Jha
2046 days ago
Add some text at the beginning of the file $ echo -e "chrII_reverse\n$(cat chrII_reverse.fa )" > chrII_reverse.fa
#Add
#FirstLine
#Text
Neelam Jha
@neelam
Thread
By
Neelam Jha
2046 days ago
Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa
#Multi
#Single
#Fasta
#Convert
Neelam Jha
@neelam
Thread
By
Neelam Jha
2119 days ago
https:/
/
gatkforums.broadinstitute.org/
gatk/
discussion/
1268/
what-is-a-vcf-and-how-should-i-interpret-it
#VCF
#vcf
#SNP
Neelam Jha
@neelam
Thread
By
Neelam Jha
2157 days ago
#Convert
a
#multi
-line
#fasta
to a
#singleline
#fasta
$ awk '!/^>/ { printf "%s", $0; n = "\n" } /^>/ { print n $0; n = "" } END { printf "%s", n }' sample1.fa > sample1_singleline.fa
Neelam Jha
@neelam
Thread
By
Neelam Jha
2157 days ago
sed -i -e '/^+/,/^\@/{/^+/!{/^\@/!d}}; /^+/ d; s/@/>/g' OUTPUT.fastq > out.fa
#Convert
Neelam Jha
@neelam
Thread
By
Neelam Jha
2195 days ago
Bioinformatics Job at MDU, Rohtak
http:/
/
www.mdurohtak.ac.in/
pdf18/
Advt/
ADvertisement%2028%20of%202018.pdf
#MDU
#Rohtak
Neelam Jha
@neelam
Thread
By
Neelam Jha
2195 days ago
Bioinformatics job at Naotia University
https:/
/
drive.google.com/
file/
d/
0B0Y1Fpxmzyd3OHQ3aUNYa3hZY2c/
view?pref=2&pli=1
#Job
#Neotia
#Professor
Neelam Jha
@neelam
Thread
By
Neelam Jha
2260 days ago
One the DVD tray in Ubuntu $ eject $ eject -t
#Close
#Tray
#Ubuntu
#DVD
Neelam Jha
@neelam
Thread
By
Neelam Jha
2331 days ago
Bioinformatics opportunity for AU, India students
http:/
/
allduniv.ac.in/
ckfinder/
userfiles/
files/
Final%20Advt%20171117.pdf
#AU
#Allahabad
#Opportunity
Neelam Jha
@neelam
Thread
By
Neelam Jha
2345 days ago
Store all files in a array using perl: my
@filesbwa
= <$base_name/reads/$base_name.$library.bwa.*fa>
#Store
#Keep
#Array
#Perl
Neelam Jha
@neelam
Thread
By
Neelam Jha
2349 days ago
Bioinformatics JRF at IIT
https:/
/
www.iitr.ac.in/
administration/
uploads/
File/
bt/
2017/
adv30112017.pdf
#JRF
Neelam Jha
@neelam
Thread
By
Neelam Jha
2367 days ago
3D-Jury: a simple approach to improve protein structure predictions
#Protein
#Predict
#Structure
https:/
/
academic.oup.com/
bioinformatics/
article/
19/
8/
1015/
235399
Neelam Jha
@neelam
Thread
By
Neelam Jha
2465 days ago
Scripts for Phylogenetics at
https:/
/
github.com/
gigascience/
paper-jarvis2014
#Phylogenetics
#Script
#Perl
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