BOL

Useful bioinformatics database for GATK analysis ftp://ftp.broadinstitute.org/bundle/hg38/ #GATK #Database

(grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

#Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

Analyse your sample with GATK pipeline. https://app.terra.bio/ #GATK

GATK is open source https://software.broadinstitute.org/gatk/ #GATK #Broad

#GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp