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Search a PATTERN in a file and print the line. perl -ne '/PATTERN/ && print' fileName #Perl #Pattern #Print #Search #Line

MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

Epiviz: interactive visual analytics for functional genomics data http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3038.html #Visual #Analytics #Genomics #NGS

Genome data mining for everyone http://www.bmbreports.org/fulltext/bmbreports/view.php?vol=41&page=757 #Report #Genome #Research #BMC

galign: A Tool for Rapid Genome Polymorphism Discovery http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746318/ #SNP #Variation #galign #Genome

Validated whole genome structural variation detection using multiple callers http://bcbio.wordpress.com/ #VariationCalling #Genome #SNP

Regulatory Sequence Analysis Tools http://rsat.ulb.ac.be/rsat/ #RSAT #SequenceAnalysis

A New Online Computational Biology Curriculum http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003662 #Computational #Biology #Curriculum

A Quick Guide to Genomics and Bioinformatics Training for Clinical and Public Audiences http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003510 #Training

NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

Useful R resources @ http://www.stat.wisc.edu/network-skills/learnR #R #Stats #Learn #Tutorial #Material #Learn #Course

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet