BOL

DSP analysis of DNA sequences http://www.bioprotection.org/articles/DNA-37.pdf #DSP #DNA #Analysis #Sequences #Scoring

Extract sequence by ids $ xargs samtools faidx Adineta_vaga.v2.pep.fa < AlienIds > allAlienSeq.fa #Extract #Ids #Sequences

#Mappy provides a convenient #interface to #minimap2, a fast and accurate #C program to #align #genomic and transcribe nucleotide #sequences. https://pypi.org/project/mappy/

https://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/Phylogenetics/phylo12.html #P-distance #Distance #Calculation #Sequences #Align

Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner