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Glob multiple files in Linux with Perl. my @soundfiles = grep {/\.(wav|mid|mp3|rm|ogg)$/i} glob("*"); #Perl #Linux #Glob

Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

Scripts for Phylogenetics at https://github.com/gigascience/paper-jarvis2014 #Phylogenetics #Script #Perl

Perl regular expression syntax. https://www.cs.tut.fi/~jkorpela/perl/regexp.html #Perl #Regexp #Learn #Help

Perl basics http://perldoc.perl.org/perlrequick.html #Perl #quick

Run length coding https://www.rosettacode.org/wiki/Run-length_encoding#Perl #Perl #String

Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner

Update CPAN $ cpan> install CPAN; reload cpan #cpan #perl

Handling #CSV file with #Perl http://perlmeme.org/tutorials/parsing_csv.html

Perl courses https://www.gossland.com/perlcourse/default/index #Perl #Courses #Tutorial

Chi squared test https://edwards.sdsu.edu/research/calculating-chi-squared-wiht-perl/ #Perl #Chi #Probability

Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script

use File::Basename; use lib dirname (__FILE__); # To search lib in local folder #Perl #Modules

Data structure with R http://staff.washington.edu/jon/dsa-perl/dsa-perl.html #R #Data #Structure #Script #Perl

Collection of Perl scripts for bioinformatician https://github.com/vikas0633/perl #Perl #Bioinfo #Scripts