BOL

The CPC sever accepts RNA #transcript sequences as input, and outputs assessed #protein-coding potential of the transcripts. http://cpc2.gao-lab.org/about.php

https://scitechdaily.com/creating-better-drugs-with-deep-learning-3d-technology-and-improved-protein-modeling/ #DL #MachineLearning #Drug #Protein #Modeling

#tBLASTn #command line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1 #Blast #Protein

3D-Jury: a simple approach to improve protein structure predictions #Protein #Predict #Structure https://academic.oup.com/bioinformatics/article/19/8/1015/235399

#GECA: a fast tool for #gene #evolution and #conservation analysis in #eukaryotic #protein #families. https://www.ncbi.nlm.nih.gov/pubmed/22467908

Just_Annotate_My_proteins (JAMp) http://jamps.sourceforge.net/ #Protein #Annotate #JAMp

What Makes a Protein Sequence a Prion? http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004013 #Protein

https://www.predictprotein.org/ #Protein #Structure #Prediction

MD tutorial http://www.ch.embnet.org/MD_tutorial/pages/MD.Part1.html #Protein #MD #Tutorial

Classification of Proteins (CLAP)-http://nslab.mbu.iisc.ernet.in/clap/index.html #protein

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003829 #Protein #Binding

Quick Guide to the New Uniprot Web http://computationalproteomic.blogspot.in/2014/09/quick-guide-to-new-uniprot-web.html #Uniprot #Protein #Tutorial

Pepper: Cytoscape app for Protein complex Expansion using Protein-Protein intERaction networks bioinformatics.oxfordjournals.org/content/early/2014/08/18/bioinformatics.btu517.short? #Protein #Interac

Visualization of protein sequence features using JavaScript and SVG with pViz.js http://bioinformatics.oxfordjournals.org/content/early/2014/08/21/bioinformatics.btu567.short? #Protein #Visualize #Jav

http://lbgi.fr/neopipe/ #Protein #Seq