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The Wire
#grep
Wire posts tagged with 'grep'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1782 days ago
Grep a term from a file in Linux. $ grep -A1 "term" input.fasta > output.fasta
#Grep
#Term
Jit
@jit.aber
Thread
By
Jit
2533 days ago
Linux command to find the file contains a string "LOCK_EX": grep -Ril "LOCK_EX" /
#Root
#Find
#Linux
#Grep
#search
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
2743 days ago
Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt
#Linux
#Tricks
#View
#Grep
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2822 days ago
Extract values : cat seeALN.xls | grep -w "scaffold_1" to
#grep
#exact
#matching
words from file seeALN.xls
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2905 days ago
Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both
#grep
#Linux
#Tricks
#Lines
#Matches
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3065 days ago
Grep all the processor in Linux system $ grep "^processor" /proc/cpuinfo | tail -n 1 | awk '{print $3}'
#Grep
#OS
#Linux
#Processor
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3344 days ago
Count the number of sequences in fastaq file. grep -c '^@' sample1.fq
#Fastaq
#Count
#Number
#Grep
#Dirty
#Oneliner
#NGS
Jit
@jit.aber
Thread
By
Jit
3760 days ago
To count number of fasta entries, I use: grep -c '^>' mySequences.fasta
#Perl
#Count
#Number
#Fasta
#Linux
#Grep
Jit
@jit.aber
Thread
By
Jit
3800 days ago
Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l
#Linux
#grep
#Count
#Number
#Occurrence