BOL

Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

#Duplication #FastQC http://proteo.me.uk/2013/09/a-new-way-to-look-at-duplication-in-fastqc-v0-11/ #Sequencing #NGS

Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

#NGS basics http://deeptools.readthedocs.io/en/latest/content/help_glossary.html #Tutorial #Help

Coming of age: ten years of next-generation sequencing technologies http://www.nature.com/nrg/journal/v17/n6/full/nrg.2016.49.html #Sequencing #Technology #NGS #Updates

A Multiscale Synteny Browser tool MizBee http://www.cs.utah.edu/~miriah/mizbee/Overview.html #Synteny #Browser #Genome #NGS #ComparativeGenomics

Sometime NGS is just tiring #ngs #research

Genomic data analysis http://www.bicnirrh.res.in/workshop.php #Genome #Data #Analysis #NGS #NIRRH #Mumbai

Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

http://massgenomics.org/ #NGS #medical genomics

Big Data: Astronomical or Genomical? http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002195 #Future #Genomics #Growth #Sequencing #NGS

A universal genomic coordinate translator for comparative genomics http://nedaz.github.io/kraken/ #NGS #Coordinate #Translator

A Dockerized Next Generation Sequencing Pipeline http://khp-informatics.github.io/ngs/ #NGS #Docker #Annotation

http://compbio.cs.brown.edu/software/ #tools #ngs #seq #SVs #mutation