Results for "Align"
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Comment on "Mugsy: multiple whole genome alignment tool"
...genomes genome1.fasta genome2.fasta genome3.fasta This example will align three genomes and output a fi...roblems. View or parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One option f...1276 days ago
Comment on "Setting up autoConTAMPR !"
...phyml (2:20120412-2) ...Setting up primer3 (2.3.6-1) ...Setting up probalign (1.4-3) ...Setting up probcon...ee (10.00.r1613-1) ...Setting up tigr-glimmer (3.02-3) ...Setting up tm-align (20130511+dfsg-1) ...Setting...1433 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1964 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T rea...2090 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...used for mapping. Output SAM alignments will be in genome space...sembly format. sam - Sequence Alignment/Mapping format. [auto] -L...roach. Semiglobal. Edit dist. alignment. sggotoh - Gotoh alignmen...If specified, all (secondary) alignments within (-F FLT) will be...2283 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore DNA sequencing technology can diagnose infection and detect drug-resistance http://www.laboratorytalk.com/news/usb-stick-could-revolutionise-gene-sequencing/407180.article3407 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore DNA sequencing technology can diagnose infection and detect drug-resistance http://www.laboratorytalk.com/news/usb-stick-could-revolutionise-gene-sequencing/407180.article3407 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003664 days ago
Comment on "Collection of molecular modelling and drug design related tutorial ..."
Molecular Conformation Dynamics andComputational Drug Design http://opus4.kobv.de/opus4-zib/files/742/ZR-03-20.pdf3811 days ago
Comment on "Collection of molecular modelling and drug design related tutorial ..."
Protein-Ligand Docking for Drug Design by Sam Z. Grinter http://web.missouri.edu/~szg4y4/presentation3.pdf3843 days ago
