Results for "Alignments"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...is an automated system for identifying and displaying genome synteny alignments. The genomes may be represent...Browser) is a generic sequence comparison tool for visualizing genome alignments both within and between speci...2601 days ago
Software and Tools to detect structure variation with long reads !!
...tural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and c...2598 days ago
- +7 more Blogs
Bookmarks
- ...nd share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one gen...rks like MapReduce. Explore data by slicing alignments and variants by genomic range...
3479 days ago
Alignment of closely related whole genomes/scaffolds
...ngth, to aid in the study of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments. Please report new whole gen...3009 days ago
- +89 more Bookmarks
Files
- ...porarySam": No such file or directory[bwa_aln_core] convert to sequence coordinate... 1.00 sec[bwa_aln_core] refine gapped alignments... 6.07 sec[bwa_aln_core] print alignments... PREPROCESS:Fastq format is...
2142 days ago
Pages
Bio++ : C Language libraries for your biological need
...NA, RNA, Proteins, Codons, any 'Word' of a given size).Several containers available for inner storage, with several implementations. Support for alignments.Various I/O formats supported...3938 days ago
Genome Assembly Tools and Software - PART2 !!
...am data analysis by relieving investigators from the burdens of data preparation. SAMMate 2.7.4 / assemblySAM 1.1 – Processing Short Read Alignments in SAM/BAM format / RNA-Seq A...2676 days ago
- +1 more Pages
Top-level pages
- ...ar sequences contain information on sequence evolution in the form of specific conservation patters at all sequence positions. Multiple sequence alignments are useful for building se...
3938 days ago
List of bioinformatics open source projects/software.
...e given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden Package Sequence ass...3747 days ago
- +12 more Top-level pages
Wire posts
News
- ...through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provide...cludes also a public download section with the complete set of trees, alignments and orthology predictions. &...
3909 days ago
- ...Protists and Fungi with hundreds of annotated genomes Variation data for bread wheat, rice, Aedes aegypti, and Ixodes scapularis Whole genome alignments for O. longistaminata and T....
3236 days ago
- +2 more News
ResearchLabs posts
- ...ions and duplications through analysis of the read depth-of-coverage; (iii) split read analysis, which detects SVs by evaluating gapped sequence alignments; and (iv) sequence assembly,...
2983 days ago
Video
Des Higgins: Visualizing Multiple Sequence Alignments
...y-used Clustal tool. He highlights the emerging challenge of managing alignments with a very large number of s...llenge, including faster algorithms and abstract views of clusters of alignments. This talk was presented at V...3712 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.3383 days ago
Bio-Scripts
BASH script for SelfBLAST a genome
...n echo "You want entire sequence to blast" SEQ=$FASTAFILE else echo "Something went wrong $USER - Contact jitendra" fi echo "Doing alignments -- BLASting"; blastn -task m...2642 days ago
- ...sequences starting or ending with >= 10N --qual-filter-1 Filter used in current 1000 Genomes data Filters based on alignments Filters are active whe...
2117 days ago
- +6 more Bio-Scripts
Tags
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions...Tags: Whole genome, NGS, Genome, Scaffolds, pan-genome, Evolution, Alignments, Compare
3009 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify sm...Tags: Bioinformatics, Kraken, Metagenomic, Sequence, Classification, Alignments, NGS
2859 days ago
- +12 more Tags
Comments
Comment on "Basic command-line to run BLAST"
..."words," and searching for matches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for...411 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1235 days ago
- +5 more Comments
