Results for "BLAST"
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In current era, we are handling huge amount of genomics data, and analysing it to make some biological sense out of it. Large-scale sequence studies requiring BLAST-based analysis produce huge amounts of data to be parsed. There are several BLAST parsers are available, but they are often missing ...Tags: BLAST, Parser, BLAST Parser, C++
3880 days ago
- A new version (2.2.31) of the stand-alone BLAST executables (Linux, Windows and MacOSX on FTP) is now available. New features include support for BLAST-XML2 specification (information here) and JSON BLAST output format, as well as several bug fixes and improvements. The BLAST AMI at AWS will also...
Tags: BLAST, Standalone, BLAST+, Release, Update
3236 days ago
- Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improvements and fixes, see the release notes:https://ncbi.nlm.nih.gov/tools/gbench/releasenotes New Features BLAST Tool: added s...
Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.
2856 days ago
BLAST nr version 5 database, (nr_v5)
NCBI have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for BLAST+ users. The changes in nr preserve the taxonomic div...Tags: BLAST, NCBI, nr, version, 5, database, nr_v5
1708 days ago
- The BLAST+ 2.10.0 release is now available from at FTP site. The new version offers the following improvements: updated composition-based statistics for protein-protein (including translated BLAST) comparisons to provide stable results when you request fewer than the default number ...
Tags: BLAST+ 2.10.0, release, available, FTP, site, version, offers, improvements, BLAST, blast
1590 days ago
New Layout for BLAST ftp Database Site
As announced previously, the new default database version for BLAST+ is dbV5. To complete this transition, the ftp database site will be updated to support this change. We expect this change to happen around February 4th, please adjust your scripts or procedur...Tags: New, Layout, BLAST, ftp, Database, Site
1557 days ago
- BLAST team added a new feature (Max 3' match), shown in Figure 1, to Primer-BLAST that limits the length of 3' exon matches when designing exon-exon spanning primers. This makes it less likely that primers specifically designed to amplify transcripts will also amplify genomic DNA contamination in...
Tags: Primer, BLAST, Feature, Alignments !
1459 days ago
BLAST+ 2.11.0 release is now available on FTP site !
BLAST+ 2.11.0 release is now available from our FTP site. The main advance is the ability to provide usage reports to NCBI to help us improve BLAST. This information is limited to the name of the BLAST program, some basic database metadata, a few BLAST parameters, as well the number and total siz...Tags: BLAST, 2.11.0, release, available, FTP, site
1258 days ago
NCBI BLAST have added new columns to the Descriptions
NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are Scientific Name, Common Name, Taxid, and Accession Length. Common Name and Accession Length are now part of the default display. You can click 'Select columns' or 'Manage columns' to add or...Tags: NCBI, BLAST, add, columns, Descriptions, Table, web, BLAST, output
1242 days ago
Cleaner BLAST Databases for More Accurate Results
Do you use BLAST to identify a sequence or the evolutionary scope of a gene? That can be challenging if contaminated and misclassified sequences are in the BLAST databases and show up in your search results. To address this problem, we now use the NCBI quality assurance tools liste...Tags: Cleaner, BLAST, Databases, Accurate, Results
3 days ago
