Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...ignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg2...1137 days ago
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ONT assembly and Illumina polishing pipeline
...Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem. Perform correction...2346 days ago
Seal: SEquence ALignment evaluation suite
...orrectly mapped. Computing run times and measures of accuracy. Seal has interfaces to evaluate the following software packages: Bowtie BWA MAQ mrFAST mrsFAST Novoal...2305 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...nfigure supports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in mult...2303 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...p;for the assembly. Trinity components should be merged with cap3. Our code to perform the merging is available here. We recommend BWA for mapping of the reads...2157 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...ion of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li. Contigs...;rules. These contigs are then immediately aligned to the reference with BWA-MEM and parsed to identify va...1921 days ago