2136 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use...maxRetries => 5, help => undef ); Getopt::Long...2907 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@b...'./../atom-amd64.deb' The following packages were automatically installed and are no long...1167 days ago
2696 days ago
2685 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::Dum...rt with 0 fitness my $max_entry_length = 20; # longest wo...that's OK) # increment the fitness depending on how long...2363 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usag...documentation in usage code use Getopt::Long qw(:config auto_version auto_...get = ($tSize < $qSize) ? 1 : 0; my $longTarget...get * 4)]; my $lLen = $fields[10 + ($long...2300 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package m...mp bioconda/linux-64::perl-file-temp-0.2304-pl526_2 perl-getopt-long bioconda/linux-64::perl-getopt-long...1444 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower than 2 # return a message showing the error if (scalar(@ARGV) < 2) { print "d...2147 days ago
2143 days ago