3639 days ago
The DNA of a Successful Bioinformatician decoded !!!
...ut quality, timelines, good team culture, respectful communication (!!), clean code, if all this doesn’t matter to us, then I believe the probability is higher that we fail in res...3698 days ago
String graph based genome assembly software and tools !
...hub.com/dhlbh/BASE It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the gen...2320 days ago
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1606 days ago
Bio++ : C Language libraries for your biological need
...ser-defined.Support for rate-across sites models, with virtually any probability distribution, allowing for in...k & Dirty (32bits only), Wichmann and Hill, Knuth. Samplers from probability distributions (uniform, norma...3939 days ago
Genome Assembly Tools and Software - PART2 !!
...tion sequencing technology. RMAP can map reads with or without error probability information (quality scores)...et or Ray in quality. LACHESIS – Genome Assembly with Contact Probability MapsLACHESIS is method t...2677 days ago
3937 days ago
Commercial and public next-gen-seq (NGS) software
...l Brudno and Stephen Rumble at the University of Toronto. POSIX. Slider- An application for the Illumina Sequence Analyzer output that uses the probability files instead of the sequence...3510 days ago
Perl script to find coding regions in DNA sequences
...likelihood ratio is for a current triplet, the ratio between # the probability computed from the table of codon frequencies divided # by the random probability (uniform), that is, 1/64. Aft...2146 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2131 days ago
Tags: Bioinformatics, Analysis, Statistics, Probability
2726 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code, documentation and a user's guide are available at: http://shendurelab.github.io/LACHESIS. Manusc...Tags: LACHESIS, Genome, Assembly, Hi-C, Contact, Probability, Maps, Genome, Assembly
2174 days ago
Comment on "A quick guide to Phred scaling"
...equencing reads. It is used to quantify the probability of an error in each base call...re corresponds to a 10-fold decrease in the probability of an error. For example, a P...) where Q is the Phred score, and p is the probability of an error in the base call....407 days ago