Results for "Reads"

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  • cutadapt

    ...of unwanted sequence from your high-throughput sequencing reads. Cleaning your data in this way is often required: Reads from small-RNA sequencing con...sample, but often you don’t want them to be in your reads. Cutadapt helps with these t...

    314 days ago

  • LINKS

    ...S is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Ox...d high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft...

    139 days ago

  • quickmerge: A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

    ...s based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made with illumina short reads and PacBio long reads to improve contiguities of an...

    94 days ago

  • A5-miseq

    ...accurate results, A5-miseq requires Illumina data with certain characteristics. A5-miseq will likely not work well with Illumina reads shorter than around 80nt, or reads where the base qualities are...

    217 days ago

  • MIRO : miRNA omics

    ...s present implementation MIRO is especially adapted for the analysis of reads generated with the Illumina sequencing platform. MIRO allows to preprocess the Solexa-reads, map them flexibly to several...

    170 days ago

  • WgSim

    Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes...SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution seq...

    273 days ago

  • bipype

    ...). If WGS are chosen, then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, aligns reads to reference se...

    112 days ago

  • Cutadapt

    ...d other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps with these t...rimer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapter sequ...

    99 days ago

  • Stampy

    Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference...mic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain seque...

    306 days ago

  • mrFAST: Micro Read Fast Alignment Search Tool

    ...is a read mapper that is designed to map short reads to reference genome with a sp...and segmental duplications. mrFAST maps short reads with respect to user defined...d 'all'  mappings for a given set of reads, however it can return one "b...

    331 days ago