Various scholarships around the world !!
...ing Countries’ StudentsScholarship Provider: International Society of NephrologyEligible Students: The candidates with the highest scores will be granted a fellowship....2808 days ago
BBTools for bioinformatician !
...BMap package automatically changes q-scores of Ns that are above 0 to 0 and called bases with q-scores below 2 to 2, since occasiona...me only (this considers the combined scores of read pairs - pairs are alw...d 4000) also using quantized quality scores, I developed it for recalibra...2261 days ago
1083 days ago
2989 days ago
Genome Assembly Tools and Software - PART2 !!
...AP can map reads with or without error probability information (quality scores) and supports paired-end read.... The quality trimming portion of lucy makes use of phred quality scores, such as those produced by ma...2677 days ago
List of In-silico Binding Site Prediction Tools
...ics, including changes in solvent accessible surface area, energy-based scores, and sequence conservation, a...ieve a significantly higher mean Matthews Correlation Coefficient (MCC) scores and Binding-site Distance Tes...3735 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...impact predictions, evolutionary conservation scores and pathogenicity Supports a...EST, SNVGet; “CRAVAT provides predictive scores for germline variants, somati...file), deletion genes file (text file), Gistic Scores file, Segmented copy number (...2900 days ago
3725 days ago
Needleman-Wunsch Algorithm in Perl
...matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring scheme (instead of using fixed MATCH and MISMATCH scores we will use values read from...2896 days ago
Installing Porechop on Ubuntu !
...sent (default: 10000) --scoring_scheme SCORING_SCHEME Comma-delimited string of alignment scores: match,...2097 days ago
Tags: BLAST, Scores, Parameters, E-Values
3866 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site in an assembled genome to calculate a quality sc...Tags: Referee, Genome, assembly, quality, scores, ngs
1999 days ago
Comment on "A quick guide to Phred scaling"
...stem for representing the quality scores of sequencing reads. It is us...Phred scaling: Phred quality scores: Phred quality scores are rep...score encoding: The Phred quality scores are typically encoded in the...stem for representing the quality scores of sequencing reads, where hi...406 days ago
Comment on "Does anyone have Nanopore latest updates?"
...the current generation NGS boxes. Nanopores comes at 1/1000X prices while we all pay 5X and 10X for other boxes. I will post raw data and quality scores shortly....3264 days ago