List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub htt...linical information; gene expression; copy number variation; visualization CGWB https://...gwb.nci.nih.gov/ Visualization; gene mutation and variation; automated analysis pipeline...2311 days ago
List of motif discovery tools !
...otein annotation by secondary structure elements Perform secondary structure predictions on protein sequen...sidues from proteins of known structure Search for functional annota...BSite -- a database of the 3D structure of protein functional sites...ional sites on macromolecular structure...1984 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may&n...he supplementary alignment flag. Chimeric reads are indicative of structural variation in DNA-seq and it may indicat...1828 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinf...s, 25000 investigational drugs and 80000 chemical structures http://scientific.thomson.co....gov/ sites/entrez?db=omim PDTD: 3D drug target structure...1425 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for impr...n from raw, short-read sequencing data to genotype a wide spectrum of genetic variation (Tobias Marschall)● SQAN...983 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de...to genome assembly. No previous knowledge of the source DNA sequence length, structure...1195 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldquo...925 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Funct...expansion of ARED reveals AU-rich element cluster variations between human and mouse Vie...a visualization tool for intra- and inter-species variation among individual biomarkers...668 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Ev...s - Fundamental Theorem. Genetic Variation 1a. Lewontin, R. C., and J....natural populations. II. Amount of variation and degree of heterozygosity...3: 23-35. Understanding sequence variation 1. Begun D. J., Aquadro C. F...668 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Ev...s - Fundamental Theorem. Genetic Variation 1a. Lewontin, R. C., and J....natural populations. II. Amount of variation and degree of heterozygosity...3: 23-35. Understanding sequence variation 1. Begun D. J., Aquadro C. F...569 days ago