Results for "TE"
Users
About me: ...on chromosomal breakpoint and amniotes evolution. I (We) develop ce...mes, epigenomes, transcriptomes, proteomes, etc.) to answer specific...fer to our publications to get a better sense of what we do. Collabo...utionary-breakpoint-regions-in-amniote-genomes(57ec9f04-1029-4f53-a7...2 days ago
- About me: I am a computational biologist and currently working on system biology.
3909 days ago
- +120 more Users
Blogs
Five unique traits of effective computational biologist
...roduce working code. There are some technically skilled biological p...l programmer. 1. Learn and get updated Some of the bad biological...t a year before because it looked interesting; and the great biologi...aph (which they generally produce after one year of work) biological...3942 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...module is missing. Can't locate XML/parser.pm in @INC (@INC c...ver is not connected to the Internet. Download Perl module: G...perl -MCPAN -e shellCan't locate CPAN.pm in @INC (@INC contain...bsp; : perl-Test-Harness &n...3941 days ago
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Bookmarks
- Nice step wide information on perl module installation.
3941 days ago
- ...understand the background of software/tool to better explain the data computation...ound this online bioinformatics courses really interesting where they are coverin...lyzing genome rearrangements, and identifying proteins. Please paste other usefu...
3936 days ago
- +1178 more Bookmarks
Files
- In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
3944 days ago
Regular Expression Cheat Sheet
...find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The...sions, including symbols, ranges, grouping, assertions and some sample patterns to get you started.3944 days ago
- +35 more Files
Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3942 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3936 days ago
- +7 more Discussion topics
Pages
Bio++ : C Language libraries for your biological need
...nguage. As Dennis Ritchie writes in his paper, "The Developme...ntly, it supports object-oriented programming in a familiar se...or formats like SVG, Fig or LaTeX-PGF.So get relax and solve t...on-homogeneous model is supported!Mixed models (beta). Molecu...3939 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced...lk-like features. Ruby originated in Japan during the mid-1990...It also has a dynamic typesystem and automatic memory managem...org/wiki/Cookbook:Table_of_Contents Ruby Programming Challeng...
3939 days ago
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Top-level pages
- ...cience in which biology, computer science, and information tec...is conceptualizing biology in terms of molecules (in the sense...r example, is not to corroborate or refute a hypothesis, but t...different genomes. Also the detection of gene fusion and gene...
3939 days ago
- ...odern DNA sequencing era which resulted in further invention, improv...development toward new advanced strategies of high-throughput DNA se...rojects. In the fast growing HT-NGS technologies, the main challenge...to handle ever growing genome or protein sequences. The next step a...
3939 days ago
- +113 more Top-level pages
Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3944 days ago
- ...DSC - a platform for developers of statistical software. Recently useR! conference have been organized University of Castilla-La Mancha, Albacete, Spain. http://www.edii.uclm...
3943 days ago
- +205 more News
Opportunity posts
- ...13 TV-L) for applicants interested in performing high-qual...ment is governed by the Fixed Term Research Contracts Act (Wis...seminar where they can meet internationally renowned researche...ectronically signed and encrypted form by July 30, 2013 (stamp...
3939 days ago
- CSIR-INSTITUTE OF HIMALAYAN BIORESOURCE TECHNOLOGY (Council of Scientif...the following areas on purely temporary basis for the duration...of Position: Research Associate (NGS). No. of Position(s)...d: Rs.22,000/- P.M. (consolidated). Essential Qualification...
3936 days ago
- +606 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...nization and evolution of biological systems using computational biology and bioinformatics techniques. We seek to accuratel...ict links, such as specific molecular interactions, in eukaryotic cell s...ns to cause disease. This work is supported through the development of o...3939 days ago
- ...lobal responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6...e genome-wide responses studied with the "omics" techniques (transcriptomics, pro...erimental data, which are processed, archived, integrated and represented as work...
3911 days ago
- +146 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
...movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine...Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Sequence Baara...3910 days ago
Perl Poem: Parse it in both Perl and English!
..., Sharon Hopkins. She has written quite a few Perl poems, as w...on Perl poetry that she presented at the Usenix Winter 1992 Te...#!/usr/bin/perl APPEAL: listen (please, please); open your...hidden), open (locks, doors), tell secrets;do not, I-beg-you,...3910 days ago
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Video
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3895 days ago
Influenza animation - flu virus mechanism
...nism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent f...gn: Javier Barrero, Logical Disorder Production Company: David Hager, All Terrain Media3844 days ago
- +98 more Video
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov...1138 days ago
- #!/usr/bin/perl use strict; use warnings; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA = $DNA.$polyA;...
2908 days ago
- +334 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
...o assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Which languages would you recommend to a student wishing to enter the world of bioinformatics?3522 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3518 days ago
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Tryst
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove useful to o...3408 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...ty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Cente...h a Bioinformatician” interview series ... What pus...prokaryotic two-component systems. In this project, I will be...r effective methods to eliminate the manipulated data and reac...2353 days ago
Groups
...h bioinformatics as a field of study, is at an interesting crossroads. As an acad...was — a cross-disciplinary endeavor between computer science and molecular biolog...uccess, and it has received a lot of bad press lately, some of it deserved. This...3944 days ago
INTIMATE secrets hidden in your DNA could be stolen without y...n of your genome, revealing DNA variants that help determine your susceptibility to a...u hack the entire genome to understand the god's written sophiticated genetic codes....3944 days ago
- +22 more Groups
Tags
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from se...
Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome
2808 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in developing new methods for their computational analysis. Following are the list of resource and location for TE dis...Tags: Computational, resources, TE, discovery, detection, Transposable, Elements (TEs)
2265 days ago
- +2 more Tags
Comments
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp389 days ago
Comment on "Benchmarking Perl Module !"
...olves measuring the performance of the module in terms of its execution time and...g the following command: cpan Benchmark Write benchmark code: Write a simpl...ese function takes two arguments: the number of iterations to run and a reference...407 days ago
- +591 more Comments
