Results for "Variant"
Blogs
Computer simulation of genetic mechanism !!
...w.uhnresearch.ca/labs/tillier/software.htm#3 SimRare Rare variant simulation and analysis tool...for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge....2966 days ago
Structural variation: the hidden genomic treasure
... The most‐studied structural variants are copy number variations (...consequences. Structural variants (SVs) such as deletions, ins...of new detection methods, smaller variants (between 50 and 1000 base pa...iscovery of unbalanced structural variants (copy-number variants) with...2693 days ago
Software and Tools to detect structure variation with long reads !!
...ly resolves the most novel SV variants. 8-10X PacBio coverage of si...identify genomic context and variant breakpoints at the sequence l...-SV: It identifies structural variants from next-generation paired...y is an implementation of two variant-identification approaches des...2599 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...and genome assembly softwarehttps://github.com/jts/nanopolish nanoporeVariant-detection tool for nanopore s...ttps://sourceforge.net/p/rpore/wiki/Home/ PoreSeqError-correction and variant-calling softwarehttps://githu...2311 days ago
- ...mes file has these fields: tax_id -- the id of node associated with this name name_txt -- name itself unique name -- the unique variant of this name if name not uniq...
1539 days ago
Bioinformatics tools for telomere to telomere assembly !
...;Merfin – k-mer-based assembly and variant calling evaluation for improv...nces and removing potential chimeric sequence variants (Yuanyuan Cheng @Yuanyu...ltering, comparing, and annotating structural variant (SV) calls in VCF format (Aar...983 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographically...882 days ago
Illumina based assembly pipeline steps !
...host reads (Kraken 2; optional) Variant calling Read alignment (Bowt...ts (mosdepth) Choice of multiple variant calling and consensus sequenc...default for metagenomics data) Variant annotation (SnpEff, SnpSift)...raw read, alignment, assembly and variant calling results (MultiQC)...868 days ago
Useful Bioinformatics Analysis Tools !
...ER: read error corrector based on KMC, Bioinformatics, 2017; 33(7):1086–1089, TGC Compressor of collections of genomes given in Variant Call Format (VCF) files. &bu...854 days ago
Understanding DUMP files from NCBI Taxonomy database !
... Taxonomy names file (names.dmp): tax_id -- the id of node associated with this name name_txt -- name itself unique name -- the unique variant of this name if name not uniq...651 days ago
